Installation
Voxalign runs on a separate computer, not the scanner console
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Voxalign runs on a separate computer, not the scanner console
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*Make sure you log in as mrfuser*
A voxalign environment is already created, so all you have to do is open a terminal window and type
source ~/Desktop/voxalign/bin/activate
I recommend installing in a python virtual environment:
create an environment named voxalign: python3 -m venv voxalign
activate it: source /path/to/env/voxalign/bin/activate
install voxalign:
pip install
You'll also need to on your computer.
Calculate a voxel prescription that exactly matches a prescription from an earlier scan session on the same participant:
Calculate a voxel position(s) that matches an MNI coordinate(s) of your choice:
Calculate the dice coefficient (a measure of overlap) to assess how well-aligned your session 1 and session 2 voxels ended up: