Example Run
An example of running LCModel on a test data set
Last updated
An example of running LCModel on a test data set
Last updated
Every user must install LCModel for their own user. If you haven't, please refer to the Installation Guide
To run LCModel's GUI you will need to start Oscar's VNC Client. LCModel is not very resource intensive so you can request a basic session
Inside your VNC session, open a Terminal window.
Navigate to LCModel's hidden directory cd ~/.lcmodel
To launch the lcmgui, simply type ./lcmgui from the current directory (~/.lcmodel)
Accept license agreement
Select Siemens at the data type prompt
Search for the share data: /oscar/data/bnc/shared/lcmodel/TestData.rda
During installation, the basis-set was installed under the LCModels' hidden directory in your home. i.e., $HOME/.lcmodel/basis-set which is equivalent to /oscar/home/$USER/.lcmodel/basis-set
Change the basis file to: $HOME/.lcmodel/basis-sets/press_te30_3t_gsh_v3.basis
You will need to add a key to the Control Parameters. We do so as follows:
A dialog will open
Add key= 210387309 to the control parameters as shown in the figure below. Be careful to match spaces. When done, press OK
LCModel will ask you if you want to save the new parameters to a new file. You can do so. If you do, the next time you can select the saved file from Advanced Settings -> Change Control-Defaults file
After pressing Run LCModel, a two page PDF will appear, which looks as follows
