Behavior and Neuroimaging Core User Manual
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About
Infrastructure Overview
XNAT
Getting Started
Accessing XNAT
Project and Protocol Naming
Project Creation in XNAT
BIDS Ready Protocols
Uploading Data
Downloading Data
Demo Dataset
Introduction
How to access it
Protocol Information
Basic analysis example: checks task
XNAT to BIDS
Getting Started
XNAT2BIDS Software
Exporting to BIDS using Oscar
BIDS Validation
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Converting non-MR data
XNAT TO BIDS (Legacy)
Oscar SBATCH Scripts
BIDS and BIDS Containers
Introduction to BIDS
mriqc
fmriprep
Analysis Pipelines
Freesurfer
CONN Toolbox
Tractography:DSI Studio
LCModel
Overview
Installation
Example Run
Running LCModel on your own data
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LCModel - Previous
Running LCModel on your own data
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