Example Run
An example of running LCModel on a test data set
Every user must install LCModel for their own user. If you haven't, please refer to the Installation Guide
To run LCModel's gui you will nedd to start Oscar's VNC Client. LCModel is not very resource intensive so you can request a basic session
- Inside your VNC session, open a Terminal window.
- Navigate to LCModel's hidden directory
cd ~/.lcmodel
Sample Terminal Window inside Oscar's VNC
- To launch the lcmgui, simply type
./lcmguifrom the current directory (~/.lcmodel) - Accept license agreement
- Select Siemens at the data type prompt
Sample Data Type Window
- Search for the share data:
/gpfs/data/bnc/shared/lcmodel/TestData.rda
Sample Data Browser Window
During installation, the basis-set was install under the LCModels' hidden directory in your home. i.e.,
$HOME/.lcmodel/basis-set which is equivalent to /gpfs/home/$USER/.lcmodel/basis-set- Change the basis file to:
$HOME/.lcmodel/basis-sets/press_te30_3t_gsh_v3.basis
Sample Control Parameters Window
You will need to add a key to the Control Parameters. We do so as follows:
A dialog will open
Add
key= 210387309 to the control parameters as shown in the figure below. Becareful to match spaces. When done, press OK
LCModel will ask you if you want to save the new parameters to a new file. You can do so. If you do, the next time you can select the saved file from Advanced Settings -> Change Control-Defaults file
After pressing Run LCModel, a two page PDF will appear, which looks as follows
LCModel Result PDF - Page 1
LCModel Result PDF - Page 2
Last modified 1yr ago