Friday, 10 June
Domain-Specific Applications and Workflows
Last updated
Domain-Specific Applications and Workflows
Last updated
This session is devoted to annotation resources and downstream analyses of NGS data using R and Bioconductor. We will cover different annotation file formats, public resources for annotation data, and leveraging those resources for downstream analyses in R.
Computational Biology Resources on Oscar | 11:00 - 11:45 EDT
We will briefly provide an overview of some of the internally developed resources that will be available on Oscar such as Refchef, SED, QCDB.
We will cover the standard Seurat pre-processing pipeline for single cell RNA-seq. We will discuss working with Seurat objects, data QC and filtering, normalization, merging and integrating multiple data sets, data vizualisation, and differential expression testing.
This session continues single cell RNA-seq data analysis. We will discuss clustering QC, working with multimodal data, assigning cell type annotations, and downstream pathway analysis.