Links

Module Changes

The table below lists old Oscar modules and their corresponding LMOD modules.
If a cell
  • is blank, that module will be installed later
  • says "(system RPM)", that software is installed on the nodes. Users don't need to load this module.
  • says "N/A", that module will NOT be installed
  • lists one or more modules , users can load a listed module using the command module load <name>
Old Oscar Module
LMOD Module
abaqus
abaqus/2021.1
abinit
abinit-mpi/9.8.3
admixture
admixture/1.3.0
afni
afni/23.3.07s
ambertools
anaconda
miniconda3/22.11.1
angsd
angsd/0.935
ants
ants/2.4.3
apache-ant
ant/1.10.13
argweaver
N/A - Users install in their python/conda environments
aria2
aria2/1.36.0
ase
N/A - Users install in their python/conda environments
aspera
assura
atlas
openblas/0.3.23
atom
atom/1.19.3
awscli
awscli/1.27.84
bamtools
bamtools/2.5.2
basilisk
basilisk/2023.11.11s
bazel
bazel/6.1.1
bbmap
bbmap/39.01
bbtools
bbmap/39.01
bcftools
bcftools/1.16
bcl2fastq
bcl2fastq2/2.20.0.422
beagle
beagle/5.4
bedGraphToBigWig
bedops
bedops/2.4.40
bedtools
bedtools2/2.31.0
binutils
(system RPM)
biopython
N/A - User install in their python/conda environments
bismark
bismark/0.23.0
blas
netlib-lapack/3.11.0
blast
blast-plus/2.2.30
blat
blat/37
blender
blender/4.0.0
boost
  • boost/1.80.0
  • boost-mpi/1.82.0
bowtie
bowtie/1.3.1
bowtie2
bowtie2/2.4.2
brotli
brotli/1.0.9
busco
N/A - Users install in their python/conda environments
bwa
bwa/0.7.17
bxh_xcede_tools
bzip2
(system RPM)
cadence
cadence/IC06.18.090
caffe
cantera
N/A - deprecated
cartopy
N/A - Users install in their python/conda environments
casa
casa/6.6.0-20-py3.8.el7
cave-utils
N/A
cdhit
cdhit/4.8.1
cdo
cdo-mpi/2.1.1
cellranger
  • cellranger/arc-2.0.1
  • cellranger/atac-2.0.0
  • cellranger/6.0.0
cesm
N/A
cfitsio
cfitsio/4.2.0
cgal
cgal/5.4.1
CharMM
chrome
chrome/119.0.6045.159s
circlator
N/A - User install in their python/conda environments
clang
llvm/16.0.2
CloudCompare
clustal_omega
clustal-omega/1.2.4
cmake
cmake/3.26.3
colordiff
olordiff/1.0.21
comsol
  • comsol/5.2
  • comsol/5.6
conn
conn/22a
connectome_workbench
connectome-workbench/1.5.0
cp2k
cppunit
crossrate
cuda
cuda/12.1.1
cudnn
cudnn/8.7.0.84-11.8
cufflinks
cufflinks/2.2.1
curl
(system RPM)
cutadapt
N/A - User install in their python/conda environments
dada2
N/A - User install in their python/conda environments
datamash
datamash/1.8
dcm2bids
N/A - User install in their python/conda environments
dcm2niix
dcm2niix/1.0.20220720
dedalus
deeparg
N/A - User install in their python/conda environments
deeplabcut
N/A - User install in their python/conda environments
deeptools
N/A - User install in their python/conda environments
deeptoolsintervals
N/A - User install in their python/conda environments
diamond
diamond/2.0.15
dicombrowser
dicombrowser/20181217
dlib
dlib/19.22
dmtcp
dmtcp/3.0.0
dos2unix
dos2unix/7.4.2
dotnet
dotnet/8.0.100
dropest
dropest/0.8.6
ds9
ds/9.8.5s
dsi
dsi-studio/chen-2023-sif
dtitk
dtitk/2.3.1s
eigen
eigen/3.4.0
eigensoft
eigensoft/7.2.1
elbencho
N/A
emacs
(system RPM)
emboss
engineering
fastme
fastme/2.1.5.1
fastq_screen
fastqc
fastqc/0.11.9
fasttree
fasttree/2.1.11
fastx-toolkit
fastx-toolkit/0.0.14
ferret
ferret/7.6.0
ffmpeg
ffmpeg/6.0
fftw
fftw/3.3.10
fiji
fiji/20231107-1617
fileZilla
filezilla/3.49.1
firefox
firefox-102.9.0
flashpca
flashpca/2.0
freebayes
freebayes/1.3.6
freeglut
freeglut/3.2.2
freesurfer
freesurfer/7.3.2
freetype
freetype/2.11.1
fsl
fsl/6.0.7.7s
fv
fv/5.5.2
gatk
gatk/4.3.0.0
gaussian
gaussian/09_v1
gaussview
gaussview/v05
gcc
(system RPM)
gdal
gdal/3.7.0
gdb
(system RPM)
geos
geos/3.11.2
ghostscript
ghostscript/10.0.0
gimp
gimp/2.10.32
git
(system RPM)
gitlfs
git-lfs/3.3.0
glew
glew/2.2.0
glm
glm/0.9.9.8
glmnet
N/A - User install in their python/conda environments
global_arrays
globalarrays-mpi/5.8.
globus
N/A - User install in their python/conda environments
gmp
gmp/6.2.1
gnuplot
gnuplot/5.4.3
golang
go/1.20.3
gpaw
grace
grace/5.1.25
graphviz
graphviz/8.0.1
gromacs
  • gromacs-mpi/2022.3
  • gromacs-mpi/2021.5
gsl
gsl/2.7.1
gsutil
google-cloud-cli/456.0.0
guppy
  • guppy/6.0.1
  • guppy/6.1.2
gurobi
gurobi/10.0.1
h5py
N/A - User install in their python/conda environments
haplostrips
hdf5
hdf5/1.14.1-2
hdfview
  • hdf5-mpi/1.12.2
  • hdf5/1.14.1-2
hisat2
hisat2/2.2.1
hmmer
hmmer-mpi/3.3.2
homer
homer/4.11.1
htop
htop/3.2.2
htseq
N/A - User install in their python/conda environments
htslib
htslib/1.17
idba
idba/1.1.3
idemp
idemp/201706
idl
idl/8.8.2
idl_DEEPS
N/A
igraph
igraph/0.7.1
imagej
imagej/154-linux64-java8
imagemagick
imagemagick/7.1.1-3
incisive
inkscape
inkscape/1.3s
intel
intel-oneapi-compilers/2023.1.0
intltool
intltool/0.51.0
ior
ior-mpi/3.3.0
iq-tree
iq-tree/2.1.3
iraf
iraf/2.17.1s
isis
N/A - User install in their python/conda environments
JAGS
jags/4.3.1
java
openjdk/11.0.17_8
jellyfish
jellyfish/2.2.7
jo
jo/1.9
json_cpp
jsoncpp/1.9.5
json_fortran
julia
julia/1.9.0
keras
N/A - User install in their python/conda environments
kneaddata
N/A - User install in their python/conda environments
kraken
kraken/1.1.1
lammps
lammps-mpi/20220623.3
lapack
netlib-lapack/3.11.0
leveldb
leveldb/1.23
lftp
lftp/4.9.2
libarchive
libarchive/3.6.2
libbeef
libbeef/Nov2020
libcutensor
cutensor/1.5.0.3
libgd
libgd/2.3.3
libgeotiff
libgeotiff/1.6.0
libgit
libgit2/1.6.4
libjpeg
libjpeg/9e
libjpeg-turbo
libjpeg-turbo/2.1.5
libpng12
libpng/1.6.39
libreoffice
libreoffice/7.2.2.sif
libtiff
libtiff/4.5.0
libvdwxc
libvdwxc-mpi/0.4.0
libwnck
libwnck/3.24.1
libxc
libxc/5.2.3
libzip
libzip/1.3.2
llvm
llvm/16.0.2
macs
N/A - User install in their python/conda environments
mafft
mafft/7.505
magma-gpu
magma/2.7.1
maple
maple/22
mark
mark/2018.07.08
materialstudio
materialstudio/2020s
mathematica
mathematica/13.2.0
matlab
matlab/R2023a
matplotlib
N/A - User install in their python/conda environments
maven
maven/3.8.4
mayavi
N/A - User install in their python/conda environments
meme
meme-mpi/5.3.0
mentor-calibre
mercurial
mercurial/5.8
meshlab
metaphlan
N/A - User install in their python/conda environments
metis
metis/5.1.0
miniconda
miniconda3/23.11.0
minimap2
minimap2/2.14
minvr
mne
N/A - User install in their python/conda environments
molden
molden/6.7
Molpro
mpfr
mpfr/4.2.0
mpi
  • hpcx-mpi/4.1.5rc2s
  • openmpi/4.1.2
mpi4py
N/A - User install in their python/conda environments
mrcc
mriconvert
mriconvert/2.1.0
mricrogl
mricrogl/2022.07.20
mricron
mricron/201909
msmc
msmc2/2.1.4
msprime
N/A - User install in their python/conda environments
mujoco-py
N/A - User install in their python/conda environments
MultiQC
N/A - User install in their python/conda environments
multiwfn
multiwfn/3.8_1208
mummer
mummer4/4.0.0rc1
muscle
muscle/3.8.1551
mysql
mysql/8.0.29
n2p2
n2p2-mpi/2.2.0
nbo
nbo/7.0
nccl
nccl/2.16.2-1
ncdu
ncdu/1.18.1
ncl
ncl-mpi/6.6.2
nco
nco/5.1.5
ncview
ncview/2.1.8
neovim
neovim/0.9.4
netcdf
netcdf-c/4.7.4
netpbm
netpbm/10.73.43
neuron
N/A - User install in their python/conda environments
ninja
ninja/1.11.1
nipype
N/A - User install in their python/conda environments
nlopt
nlopt/2.7.1
node.js
node-js/18.12.1
numpy
N/A - User install in their python/conda environments
numpydoc
N/A - User install in their python/conda environments
nvhpc-sdk
nvhpc/23.3
nvtop
nvtop/3.0.1
nwchem
nwchem-mpi/7.2.0
obitools
N/A - User install in their python/conda environments
octopus
octopus-lunter/0.7.4
openbabel
openbabel/3.1.1
openblas
openblas/0.3.23
opencv
opencv/4.6.0s
opencv-python
N/A - User install in their python/conda environments
openexr
openexr/3.1.5
openfoam
opengl
mesa/22.1.6
openjpeg
openjpeg/2.5.0
openmolcas
openscenegraph
N/A
openslide
openslide/3.4.1
openslide-python
N/A - User install in their python/conda environments
openssl
  • openssl/3.0.7s
  • openssl/1.1.1t
orca
orca-mpi/5.0.7
osgearth
N/A
ovito
ovito/3.6.0
p7zip
p7zip/17.05
pandas
N/A - User install in their python/conda environments
pandoc
pandoc/2.19.2
paraview
patchelf
patchelf/0.17.2
paup
paup/4.0a168
pcre2
pcre2/10.42
pdftk
pdftk/2.02
pdsh
pdsh-chaos/22.12
perl
perl/5.36.0
petsc
photoscan
picard-tools
picard/2.26.2
pigz
pigz/2.7
planetaryviewer
N/A - User install in their python/conda environments
plink
plink/2.00
plotly
N/A - User install in their python/conda environments
plumed
pnetcdf
parallel-netcdf-mpi/1.12.3
popoolation2
popoolation2/1.205s
prodigal
prodigal/2.6.3
proj
proj/9.2.0
protobuf
protobuf/3.22.2
py2bit
N/A - User install in their python/conda environments
pybigwig
N/A - User install in their python/conda environments
pycharm
pycharm-community/2021.3.3
pymol
N/A - User install in their python/conda environments
pypy
pypy/7.3.13
pysam
N/A - User install in their python/conda environments
pyscf
N/A - User install in their python/conda environments
python
(system RPM - python/3.9.16)
pytorch
N/A - User install in their python/conda environments
qchem
qgis
qgis/3.22
qiime
N/A - User install in their python/conda environments
qit
qit/2023-04-04
qmcpack
qmcpack-mpi/3.16.0s
qt
qt/5.15.9
qualimap
qualimap/2.2.1
quantumespresso
quantum-espresso/7.1
quast
N/A - User install in their python/conda environments
R
r/4.2.2
RAiSD
raisd/2.9
raxml
raxml-ng
raxml-ng-mpi/1.1.0
rclone
rclone/1.62.2
repeatmasker