> For the complete documentation index, see [llms.txt](https://docs.ccv.brown.edu/bnc-user-manual/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro.md).

# XNAT to BIDS

- [Getting Started](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/getting-started.md)
- [XNAT2BIDS Software](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/xnat2bids-software.md)
- [Exporting to BIDS using Oscar](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar.md)
- [Oscar Utility Script](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar/oscar-utility-script.md): Running XNAT2BIDS with run\_xnat2bids.py
- [Running xnat2bids using default configuration](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar/oscar-utility-script/running-xnat2bids-using-default-configuration.md)
- [Running xnat2bids with a custom configuration](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar/oscar-utility-script/running-xnat2bids-with-a-custom-configuration.md)
- [Syncing your XNAT project & Oscar data directory](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar/oscar-utility-script/syncing-your-xnat-project-and-oscar-data-directory.md)
- [Extra tools & features](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar/oscar-utility-script/extra-tools-and-features.md): We are continuing to develop run\_xnat2bids.py and xnat-tools, so please get in touch with any new feature suggestions!
- [Step-wise via Interact Session](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/using-oscar/using-oscar.md)
- [BIDS Validation](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/bids-validation.md)
- [Oscar](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/bids-validation/oscar.md): Running the BIDS validator on Oscar
- [Oscar - legacy validator](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/bids-validation/oscar-legacy-validator.md): Running the legacy BIDS validator on Oscar
- [Docker](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/bids-validation/docker.md)
- [Converting non-MR data](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/converting-non-mr-data.md): We are continuing to expand the types of data that can be transferred to XNAT, and exported and converted with our XNAT2BIDS software.
- [Physiological data](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/converting-non-mr-data/physiological-data.md)
- [EEG data](https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro/converting-non-mr-data/eeg-data.md)


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://docs.ccv.brown.edu/bnc-user-manual/xnat-to-bids-intro.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
