> For the complete documentation index, see [llms.txt](https://docs.ccv.brown.edu/bnc-user-manual/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.ccv.brown.edu/bnc-user-manual/bids.md).

# BIDS and BIDS Containers

- [Introduction to BIDS](https://docs.ccv.brown.edu/bnc-user-manual/bids/introduction-to-bids.md)
- [mriqc](https://docs.ccv.brown.edu/bnc-user-manual/bids/mriqc.md): a BIDS app that automates comprehensive quality assessment of structural and functional MRI data
- [fmriprep](https://docs.ccv.brown.edu/bnc-user-manual/bids/fmriprep.md): a BIDS app that runs a standardized and reproducible preprocessing pipeline on structural and functional MRI data
- [BIDS to NIMH Data Archive (NDA)](https://docs.ccv.brown.edu/bnc-user-manual/bids/bids-to-nimh-data-archive-nda.md)